Saturday, January 20, 2018

Crustaceans in the Arabian Gulf (I): Crabs 阿拉伯灣的甲殼類 (I)螃蟹

The Arabian Gulf is a shallow sea with depth mostly less than 60 m. The seabed is generally covered by soft-materials, such as sand and mud. In the nearshore waters along the coastline, there are belts of sea-grass/macro-algae meadows, which nourish plenty of invertebrates and fishes. According to the archeological study , people living along the coast of the Arabian Gulf have been harvest various marine organisms for thousands of years. 

There is a misunderstanding that the Arabian people do not eat anything from the sea but fish, which is not the case at least in present days. Crustaceans, crabs, sand lobsters, and prawns, are one of the most important invertebrates that are commercially harvested by the fishermen in the Arabian Gulf. Shrimps, either caught from the wide or cultured in the ponds, are popular food items widely consumed by the people living in Saudi Arabia. Lobsters are rare and expensive delicacy often found in the restaurants. On the contrary, the crabs, mostly the blue swimming crab (Portunus pelagicus), are also harvested in large quantities but receive seemingly far less attention from the local people. In Bahrain, crabs are listed in the menu at times, but it is rarely found in the restaurants in eastern Saudi Arabia, suggesting that people do not have good appetite for crabs [Remark: Blue swimming crab is considered as four different species, and the one distributed in the Arabian Gulf is proposed to be Portunus segnis. However, i still keep use the old name Portunus pelagicus for the blue swimming crab.] 

阿拉伯灣是一個深度多在60米以下的淺海地區,海底多是軟質的沙泥混合地質所組成。在靠近海岸的地區,有一連串的海草/海藻床,孵育了大量的無脊椎動物和魚類。根據研究指出,在阿拉伯半島沿海地區的人民,捕撈海洋生物為食,已經有數千年的歷史。通常對於海灣地區的阿拉伯人有個誤解,認為海洋生物他們只吃魚。但至少在現今,他們不只吃魚,也很愛吃蝦子。不管是野生或是養殖蝦,沙烏地人都消費了相當可觀的量。龍蝦,也是常出現在餐廳裡的高級美食。然而相對於前兩類,螃蟹類在這裡的確沒什麼出現。在對岸的巴林,偶爾還會出現在餐廳的菜單上,但是在沙烏地東邊,螃蟹極少出現在餐廳,代表出沙烏地當地對於螃蟹可能還沒有很高的接受度。


遠洋梭子蟹(市仔)是沙烏地阿拉伯灣海域最常見的食用螃蟹種類。
  Blue swimming crab (Portunus pelagicus) is the most common commercial crab species

市仔在巴林偶爾會出現在餐廳,但在東沙烏地相當少見。
 Crabs show up occasionally in the Bahrain restaurants, but is rarely seen in those in eastern Saudi
在沙烏地阿拉伯東岸,螃蟹漁業最主要在南邊的海域
In eastern Saudi Arabia, the crab fishing ground mainly located at the southern part

魚貨上岸時,習慣是將雌雄分開。這是身體偏褐色、大螯較短的雌性。
The fishermen usually separate males from the females. Female crabs are brown-bodied with shorter claws.

雄蟹通常體型較大、步足藍色、大螯也較長
Male crabs are usually larger with longer claws.

這邊海巡檢查蠻盡責的,每一箱螃蟹都要倒在平台上,確定沒有夾帶東西。
All the landings have to be checked before going to the market.

這漁港漁民主要用陷阱抓螃蟹,過期的魚就拿來當誘餌
This fisherman uses crab pot to catch the crabs, and the out-dated fish are the baits



開始烹調,先來個兩隻吧
Let's have two crabs for the dinner

港式避風塘炒蟹
Crab fried with Crispy Garlic (Hong Kong Style)

三杯炒蟹
Fried crab with Thai basil
鏽斑蟳 Charybdis feriatus 俗名花市仔,在沙烏地阿拉伯灣海域極少抓到,可說是夢幻的 種類。
Crucifix crab (Charybdis feriatus) is a crab rarely found in the Saudi waters in the Gulf.
鏽斑蟳味道是和市仔好上一些。
Crucifix crab tastes a bit better than the blue swimming crab.


Seafood is popular in Saudi Arabia, as in other countries. However, unlike in Asia countries where blue swimming crabs have decent prices, the crabs in eastern Saudi Arabia are among the cheapest item in the market with little interests from the local people. Frankly, I do not think the crabs here are as tasty as I have tried in Taiwan and other East Asian countries. Two critical issues are the lacks of proper preservation and food processing techniques. All crabs landed are dead, and therefore they do not fit well with Taiwanese or Chinese style dishes that are better with live crabs. (I do not have the courage, or a strong stomach, to try to make the "green mango salad with raw crab"). Also, there is no (or least little) industries that could peel the crab and sell the meat, either being frozen or in cans. Considering the fact of lack of appetite on crabs from the locals, most of the crabs landed in eastern Saudi Arabia should have gone to other places. This industry could have better profit if the cabs can be kept alive (for the Asia markets), or the meat could be extracted (for the western markets).

沙烏地就像其他國家一樣,海鮮相當的受歡迎。在亞洲國家,市仔要價通常不斐。但是在沙烏地東岸,螃蟹通常是最便宜的選項,當地人民對螃蟹也興趣不大。老實說,這邊的螃蟹肉蠻軟的,比不上和我在其他國家吃到的螃蟹 。這邊的螃蟹漁業,缺乏適當的保存技術,也沒有適當的食物處理技術。上岸的螃蟹都是死蟹,也因此在強調活蟹的台灣或中國料理上,就沒有那麼適合 (我也不敢嘗試,也沒那個胃,去做生螃蟹芒果沙拉)。另外,這邊也沒有引入螃蟹取肉技術。考量這邊人民對螃蟹沒什麼興趣,捕撈上岸的螃蟹,相信是輸出去其他地方。因此如果能夠引入活蟹保存技術,或是取蟹肉工廠,來滿足亞洲或歐美市場,這產業可能會有更高的獲利。

Thursday, December 21, 2017

台灣附近海域海溫圖及與阿拉伯灣西部海域之比較 Sea surface temperatrue around Taiwan and comparison with Western Araban Gulf waters

許多水文資料,都可以在網路上得到,再應用開放軟體的套件,就可以做出漂亮的圖。我還沒想到,不到兩個小時,就可以完成台灣附近海域的海底地形圖,也順便做了個海溫分析。首先我去全世界地形資料庫(Smith and Sandwell, 1997),輸入想要的範圍後,就可以輕鬆取得經緯度以及高度的資料(XYZ data)。利用統計軟體R及marmap套件,不到30行的指令,就可以做出下圖:

In recent days, it is easy to obtain detailed information through web-sites. Then by applying the packages in the open-source software, it takes me less than 2 hours to finish these plots and analysis, quite surprising. At first, i visit the website "Extract topography", which provides longitude, latitude, and altitude for selected range. The by using the statistical software R and package "marmap", i make following bathymetric map in less than 30 lines
Bathymetric map for waters around Taiwan 台灣周圍海底地形圖
從上圖而知,台灣海峽相對算淺的,大多都在100m以淺。在澎湖和嘉義間有條較深的海洋低谷,然後在高雄外海就有比較深的大陸波。然而在東部有夠深,出去沒幾下子就超過3000m,一直到宜蘭中部才比較淺。也難怪大溪漁港會有那麼多的深海魚。

We can see that Taiwan Strait is relatively shallow, mostly less than 100 m. At the east of Pong-Hu Islands there is a deeper valley, and waters offshore Kaoshung has also a deeper slope. On the other hand, there is a extreme steep slope at the eastern Taiwan. It can go up to 3000 m in a couple of 10 km offshore. Only until to the northern Taiwan the bottom becomes relative shallower. That is also the reason that the trawlers operating around this water catch a lot of deep-sea fishes.


接下來去很威的美國國家海洋與大氣署的全球每日海表層水溫資料庫 (NOAA OISST database),來擷取上圖台灣附近的每日表層海溫,再去做每月的平均:
Then I obtain the daily sea surface temperature of waters around Taiwan from NOAA OISST database, and calculate the monthly mean value:

2017 February Sea surface temperature 2017年二月台灣海表水溫圖
2017 August Sea surface temperature 2017年八月台灣海表水溫圖

基本上,相對於東邊的深處,台灣西北邊有相對劇烈表海溫季節差異。然後,為了好玩,我做了一個動畫,表示台灣附近海域從2010年一月到2017年10月表水溫的變化。

Compared to the deeper eastern Taiwanese waters, the northwestern part of Taiwan exhibits stronger seasonal contrasts. Out of fun, i make a gif animation on the monthly sea surface temperature of  waters around Taiwan from January 2010 to October 2017.


Monthly changes in SST of waters around Taiwan from Jan 2010 to Oct 2017. 2010年一月至2017年十月台灣附近海域每月海表溫的變化圖



最後,計算出1982~2016的每月長期資料,和同時期阿拉伯灣西部,沙烏地海域的表水溫做比較:
Lastly, i calculate the average monthly SST from 1982 to 2016 for waters around Taiwan, and compare those values with the western Arabian Gulf, the Saudi Arabian territorial waters in the Gulf:
The long-term monthly SST of waters around Taiwan (black line) and western Arabian Gulf (red line) from 1982 to 2015. Error bars indicate the standard deviation. 從1982至2015,台灣附近海域(黑線)和阿拉伯灣西部(紅線)的每月平均表水溫變化圖 (誤差線表示標準差)。

台灣附近海域,相對於阿拉伯灣西部,有比較穩定的季節性海水溫。西部阿拉伯灣的環境,比台灣要更極端,最高溫較高,最低溫也較低,同時每月的溫度變化也較台灣高。
Compared to the western Arabian Gulf, the waters around Taiwan have relatively stable in terms of SST. The western Arabian Gulf exhibits more extreme environment, with higher monthly maximum, and lower monthly minimum, as well as higher variation within a month.

這些圖我想應該還粗糙的,但主要想表達原來開放資料和開源軟體這麼強大。以前可能要用很專業的付費軟體分析,但是現在用網路上的可靠資源,就可以在短時間內做出很不錯的結果。Although these plots may be still rough, it is still very incredible that one can use open-source data and freeware, instead of paid professional software, to make such interesting figures!



Saturday, October 22, 2016

20160226 Taipei First Fish Market 台北第一魚市場見訪



台北第一魚市果菜批發市場,位在華中橋台北市側 (台北市萬華區萬大路533號),是目前台北市最大的魚貨及蔬菜水果批發市場,地位應該有如築地魚市之於東京一樣吧。然而魚貨拍賣市場第一是開放時間很早,魚貨大概凌晨兩點就開始陸續卸魚,而拍賣四點就開始,對一般人實在是有點早。第二,也是最重要的,魚貨拍賣市場不對外開放,所以一般人想去看也沒辦法。還好都有團體可以安排導覽的服務 (https://play.niceday.tw/product/992),就趁回台短短的時間,來去參觀一下。


Taipei first fruit and vegetable wholesale market locates in the southwestern corner of Taipei-City, (No.533, Wanda Rd., Wanhua Dist., Taipei City 108, Taiwan), is the biggest wholesale market for the fresh fish, fruit and vegetable in Taipei City. Its role for supplying fresh fish to Taipei City is allegedly as similar as Tsukiji fish market to Tokyo, so i was interested in visiting there since some time. However, it opens early in the morning, as other wholesale auction fish markets in the world. The fresh fish arrive the market since 2 AM and the auction starts at 4 Am. In addition, only people with permission are allowed to enter the auction market. Fortunately, there is a tour host available (https://play.niceday.tw/product/992, only traditional Chinese version), and I registered one as i was in Taipei.    



既然有很多中盤商在這邊交易水果蔬菜和魚,導遊說,在市場附近的地區,是台北市產業公會最密集的地區  According to the guide, there are many merchants for trade on fruits, vegetables and fish. Therefore, the area around the market district has he highest density of trade unions in the Taipei City.


除了蔬菜水果魚,市場附近也有很多現做的豆腐店,一大早就做出最新鮮的板豆腐。這家店很親切地提供現榨無糖豆漿給大家喝。
Besides the vegs, fruits and fish, around the market there are a few tofu shops, producing fresh tofu in traditional style (the tofu is kept between wood plates, so that this style is called "plate tofu" in mandarin, meaning hard tofu). This shop is kindly offering us hot fresh soybean juice, based on which tofu is made.

貨車將貨物從產地運到市場,而電動小貨車就負責在市場內運送的任務。不同市場有不同顏色,例如紅色和黃色就運送不同的貨物。
The goods are transported to the markets by the trucks, and are transported inside the market by the small electricity-based carts. Different goods, such as vegs or fish, can be distinguished by colors of the carts.
早上四點半,魚拍賣市場已經充滿了運送活魚的卡車
AM 4:30, the outskirts of the fish auction market are already full of trucks for live fish.



魚市場拍賣主任,來替大家講解市場內拍賣的狀況
The manager of the auction market, who is introducing us about the fish auction market.

魚市場分成三區,分別拍賣近海野生魚、養殖魚,還有遠洋大型魚類。這裡是送到市場的近海野生魚,基本上都放在白色籃子內,一籃就是一個拍賣單位。
There are three zones in the fish auction market: nearshore wild fish, fish from aquaculture, and large fish from the far sea. Here are the fish caught from the wild, and they are put in a white plastic busket, the unit of the auction.  







更多在白色籃子內的"野生魚"。
More fish "allegedly" caught from the wild.


有興趣的買家,可以在開始拍賣前檢視漁獲。
Bidders can examine the fish visually before the auction starts.



拍賣開始。有資格的魚販,可以利用電子出價系統對想要的漁獲喊價。得標商和價格都會顯示在螢幕上。
The auction pricing. The qualified fishermen bit the fish being auctioned using electronic devices. The name of successful bidder and the price per kilo are shown in the screen at top. 
 
拍賣影片This is how the auction is going on.


在卸魚區的大黃魚(Larimichthys crocea),會有人(漁民自己選或市場指派)將卸下來的魚依照體型分級,將適當數量的魚裝籃。
Yellow croakers (Larimichthys crocea) in loading area. There are people (fishermen, or assigned by the market) separating the fish in the busket in proper number according the size.
排好一籃籃準備拍賣的"野生"進口黃魚。
Baskets of "wild caught" imported yellow croakers.
市場特點,進口漁獲也當是野生漁獲拍賣。除了對岸進口黃魚外,還有東南亞的紅條,葉門的白帶魚。
Imported fish that are regarded as "wild caught" fish: yellow croaker from China, coral trouts (or red groupers) front South-East Asia, and cutlass fish from Yemen. 





也有用保麗龍箱裝的"野生漁獲"。
"Wild caught" silver croakers in Styrofoam boxes.

除了野生漁獲,養殖魚類也是拍賣重點。
In addition to "wild caught", separate parts of fish are also taken to the auction.

台灣養殖魚的代表: 虱目魚。
One of the representative aquaculture fish in Taiwan: milk fish.

除了全魚,虱目魚的各個部位也會分開拿出來賣。
In addition to whole fish, fish from aquaculture are also objects of auction.

拍賣市場監測室。
The monitor room of the auction market.

在監測室內,每一個拍賣商都有存放自己拍賣記錄器的空間。
In the monitor room, each bidder has his own locker to lock his bidding recorder.

拍賣市場販賣部,賣些咖啡飲料。
Small shop in the market, selling drinks and can coffee.

 市場後面是遠洋大型魚類區。這邊似乎拍賣已經結束了,只剩下切魚的大嬸們在工作。
At the back of the market locates the region for large fish from far sea. It seems that the auction has ended, and fishwomen are chopping the large fish.

鯊魚和旗魚塊。
Chunks of sharks and billfish.

Tuesday, August 25, 2015

甘比亞魚類概論 (II) Fishes in the Gambia River: A synthesis (II)

In this blog article I am going to summarize the studies about the fish fauna in the Gambia River after 2000. First comes the joint survey between french scientists from IRD (Institut de recherche pour le développement), IFREMER (Institut français de recherche pour l'exploitation de la mer), and Department of Fisheries, the Gambia from November 2000 to April 2002. The survey is composed of two parts: hydro-acoustic and seining, which are summarized in Albaret et al. (2004) Guillard et al. (2004), Simier et al. (2006) and Guillard et al. (2012), respectively. In addition, I will also briefly introduce the survey done by the IRD team in Dakar, Senegal in the lower estuary in a similar period  (2002). Their results were summarized in Vidy et al. (2004).

在這一篇文章中,我會對在2000年後,針對甘比亞河魚類的調查研究做個整理。首先是法國研究團隊(IRD, IFREMER)以及甘比亞漁業署,在2000年11月至2002年四月於甘比亞河下游區域所完成的一項共同調查研究。這研究分成聲納調查以及圍網採樣兩部分,結果分別發表在Albaret et al. (2004)Guillard et al. (2004)Simier et al. (2006) Guillard et al. (2012)這四篇文章中。另外大約在另外一個在塞內加爾IRD的法國團隊,也針對甘比亞河下游做了一次調查,其結果總結在 Vidy et al. (2004)這篇報告。因為調查時間地點接近,就也順便介紹。


Four papers about the join survey by IRD, IFREMER, and the Department of Fisheries of the Gambia:
Albaret et al. (2004).

 Guillard et al. (2004)

Simier et al. (2006)



Guillard et al. (2012)

First let us make a quick review of area covered in their survey and its environmental settings. According to Albaret et al. (2004), the survey examined 44 stations from the river mouth, going upstream until to Deer Island (Figure 1). The surveyed area is shallow, with depths ranging from 2 to 12 m (Figure 2). As summarized in previous studies, the Gambia River has a "normal estuary" with decreasing salinity with increasing distances to the river mouth. Also the saline front moved up- and downstream as the season changed between rain and dry season (Figure 3).

首先我們先針對調查所研究的區域,還有其環境因子作個簡單整理: Albaret 等人的研究,總共在44個站點採樣,涵蓋區域從河口一直到靠近中游區的鹿島(Deer Island, 圖一)。 採樣區域不深,深度在2 ~ 12m 之間(圖二)。就如同先前研究所指出,甘比亞河是"正常型河口",鹽度隨著離河口距離增加而降低 。同時淡海水分界線,也隨著雨季乾季的交替而在往上游或往出海口移動 (圖三)。
圖一. 2000年 IRD-Gambia聯合調查中44個採樣點的分布圖。
Figure 1. Location map of the 44 sampling stations of 2000 joint survey. Credit: Albaret et al. (2004)

















圖二. 甘比亞下游自河口至中游區末端的深度變化 Credit: Darboe (2002)
Figure. 2. Depth profile of surveyed area from river mouth toward upstream.
圖三. 環境因子從河口至上游的變化圖。
Figure 3. Environment parameters from river mouth toward upstream


Their survey consist two parts: acoustic and purse-seine survey. We are going to first introduce the acoustic survey done by Guillard et al. (2004) using the ecosounder (SIMRAD EY500, split-beam, 120 kHz frequency). The acoustic survey is conducted during daytime and two protocols are applied: (1) classical mobile acoustic survey and (2) stationary (moored) sampling (Figure 4). The former means that the echosounder was attached to a boat which was cruising along a zip-zap transect with a speed of around 6 km per hour and broadcasted the sound waves vertically toward the bottom. The second means the boat kept still and the echosounder broadcasted the sound waves. The survey lasted around 30 minuntes for both approaches. The scientists also measured the hydrological parameters when they were conducting the survey.

For the acoustic survey in the Gambia River, two types of fish echoes were encountered, individual targets and schools (Figure 5). The echos of schools occurred mostly in the surface and only occurred in the lower estuary. The mobile and stationary protocol have very similar results in terms of target echo strength with high correlation. Also they observed large seasonal and spatial variation in fish biomass estimate in the sampled area, as indicated by back-scattering coefficient (see this manual for detailed information about scattering coefficient). The fish biomass showed clear contract between winter and summer or dry and rain season that it was high in the lower estuary in winter (Nov-Dec) and higher in the upper estuary in spring and summer (April to June, Figure 6).

他們團隊針對甘比亞河口區域的研究調查分為兩大部分:聲納調查以及圍網調查。首先我們介紹由Guillard et al. (2004) 所做的聲納調查研究,所使用聲納型號為: SIMRAD EY500, 屬於分區聲納(Split beam)、聲波頻率120 千赫茲。他們的聲納調查在白天進行,又分為兩種方式: 動態巡弋以定點調查。動態巡弋指漿聲納裝至在調查船上,在設定好的穿越線上以時速約六公里的速度巡弋,同時聲納往河底發送訊號,並接受河中生物的所反射的回聲訊號。定點調查指船在設定好的調查點固定不同,同時向底部發送聲納訊號並接收回聲。兩種方式(動態巡弋及定點調查)大約都耗時三十分鐘,並且同時量測必須的水文參數資訊。

參照圖五,他們發現有兩種聲納回聲訊號: 個體訊號及(魚)群體訊號,同時魚群回聲主要在表層,並且只有在河口下游出現。定點及動態巡弋所得的目標個體回聲強度之結果類似,並兩者有高度相關。將回聲強度當做魚類豐度指標(細節可參照FAO操作手冊),可以得知甘比亞河口調查區域的魚類豐度有高度的時空變化(圖六): 在冬天(或乾季初期),在河口下游魚類豐度較高,另外在春夏(乾季晚期),則是河口上游有較高的魚類豐度。


圖四. Guillard 等人的聲納調查點分佈圖。Credit: Guillard et al.(2004)
Figure 4. Distribution of transect and stations for the acoustic survey

圖五.聲納顯示出(a)個體(b)(魚)群體回聲訊號。Credit: Guillard et al.(2004)
Figure 5. Echos for (a) individual and (b) (fish) schools.
圖六.利用聲納估計生物量的時空分佈。Credit: Guillard et al.(2004)
Figure 6. Spatial distribution of biomass estimate from different surveys in different time

A purse-seine survey was conducted simultaneously with the acoustic survey on the second boat. The purse-seine survey has been applied for fish communities in other West African rivers. The purse-seine is 250 m long, 20 m deep with a mesh size of 14 mm. Nine trained fishermen deploy the net without any surface search and the results were summarized in Albaret et al. 2004.

Totally the caught 70 fish species belonging to 30 families. The fish fauna in the Gambia estuary was dominated by the sciaenid Pseudotolithus elongatus, and then followed by the clupeids Ethmalosa fimbriata, Ilisha africana and Sardinella maderensis (Table 1). The estuary in the Gambia River had a distinct fish species composition that some typical estuarine families were unusually scarce. For example, the gerreids Gerres nigri and Eucinostomus melanopterus are usually among the most abundant, widely distributed and frequently occurring species in West Africa. In the Gambia Estuary,  only a few individuals of both species were captured with  occurrences less than 2.5 %. Also only five species of mugilids were recorded and three typically common mugilids, Liza dumerili, Mugil cephalus and Mugil bananensis were represented by only a single individual. Another very common and widespread mullet, Mugil curema, was not recorded in that survey in the Gambia Estuary, either.

They classified the fish species of the Gambia Estuary into the 8 bio-ecological categories. Five categories with affinity to estuary from high to low are: strictly estuarine species (Es), estuarine species from marine origin (Em), the marine-estuarine species (ME), the marine species accessory in estuaries (Ma) and the marine species occasional in estuaries (Mo). The other three categories represented different affinity to freshwater: estuarine species from continental origin (Ec), the continental species with estuarine affinities (Ce), and the continental species, occasional in estuaries (Co). The fish in the Gambia River estuary were composed of mostly Em and ME species, suggesting the influence of marine environment. Moreover, the Em species dominated the fish community in terms of individuals and biomass, which was contributed mainly by Pseudotolithus elongatus, Ethmalosa fimbriata, and Ilisha africana (Figure 7).

The sciaenid Pseudotolithus elongatus was the most common fish species in the fish community with a remarkably wide spatio-temporal distribution in the estuary (> 96 % occurrence). It occurred in large number for all season at all sites, from sea water to totally fresh water (Figure 8). Even during the end of the rain season with maximum flood (September), it was abundant in the upper reaches of the estuary. In addition,P. elongatus was possibly able to breed in the Gambia estuary because all stages of the life cycle were represented in the system (All stages of P. elongatus were also found in Vidy et al. [2004]). 

The clupdeids Ethmalosa fimbriata, Ilisha africana and Sardinella maderensis was the second most important fish species in terms of total fish numbers, biomass and occurrence. Both juveniles and adults were recorded in seine net samples throughout the estuary. However, they showed a clear seasonal-related spatial pattern: They stayed all year round in the lower reaches and their abundances generally decreased as the distance to the sea increased. They also tend to move upstream during the dry season (Figure 8). 

Synodontis gambiensis is a species of continental origin with a strong estuarine affinity. It was more abundant in the upstream sites than in the lower reach stations, but this spatial distribution trend was also influenced by different season. As the dry season progressed, it had started moving back upstream and was confined to the upper reaches during the dry season (Figure 8).

Simier et al. (2006) analyzed the physical environment variables and the fish community based on these eight bio-ecological categories using a combination of factor analysis, principal analysis and multi-table comparison. The physical environment was characterized by a longitudinal gradient (from high to low) of salinity, dissolved oxygen and transparency that explained a majority (77.4 %) of total variance. Different bio-ecological categories of the fish also associated with this east-west environmental gradient, contrasting marine and freshwater affinity assemblages (Figure 9). This longitudinal gradient also exhibited seasonal variations, that it was the most complete in December (early dry season) and was the weakest in June (at the end of the dry season). 

Then Guillard et al. (2012) showed that two simultaneous sampling, acoustic and purse-seine, produced similar spatial trends in the abundance indexes of fish (Figure 10) and two indexes were highly correlated (Figure 11). They also examined possible interferences from other covariates with regression tree, but i think the correlation between two abundance indexes is a bit blurry. It might be clearer if the confounding effects from other covariates can be removed using statistical modelling, like generalized linear model framework.

另外一艘船上,別組團隊在聲納調查的同時進行圍網調查。圍網調查與此團隊之前在西非其他地區採用同樣的漁法: 使用長250公尺、深20公尺,網目14公厘。網具由九位經過訓練的漁民操作,並且採取"盲目取樣",不針對魚群下網。數次調查總共採取到30科70種魚類(表一),石首魚類(Pseudotolithus elongatus)是最常出現、數量最多的種類。其次是三種屬於鯡科的 Ethmalosa fimbriata、 Ilisha africanaSardinella maderensis。另外此次研究並沒有採集到數種在西非河口地區常見的魚種。如兩種鑽嘴魚類 (Gerres nigriEucinostomus melanopterus)是廣泛在西非分布的常見種,但此次採樣僅採集到幾隻個體。同時也只採集到五種鯔科魚類,同時三種常見種(杜氏鮻 Liza dumerili、烏魚 Mugil cephalus Mugil bananensis)採集數也僅有數隻。也沒有採集到庫里鯔 (Mugil curema)。

作者同時將這些河口魚種,依照對於河口及淡水的依賴度分為八大群。以對河口的依賴度由高至低分為嚴格河口群(Es)、河口海洋起源群 (Em)、海洋河口群(ME)、海洋可進入河口群(Ma)以及海洋群偶爾利用河口群(Mo)。從對淡水依賴的程度由高至低分為: 河口淡水起源群(Ec)、淡水親河口群(Ce)以及淡水偶爾利用河口群(Co)。甘比亞河河口主要以河口海洋起源群 (Em)及海洋河口群(ME)類為主,其中又以石首魚及鯡科為主(圖七)。

石首魚(Pseudotolithus elongatus)是此次調查最常見的種類,出現率超過96%,且每個季節都可以從最靠近出海口直到最靠近甘比亞河中游的站點,發現到大量的個體(圖八)。另外此魚即使在雨季的末期,河水水流量最高的九月,仍然可以在最上游的站點中採集到。另外,由於採集到各個發育階段的個體(從稚魚至成魚[Vidy et al. 2004]),因此作者推測此種魚可能可以在甘比亞下游繁殖。

鯡科魚類(Ethmalosa fimbriata, Ilisha africanaSardinella maderensi) 是在豐度、生物量以及出現頻度第二重要的種類,同時同樣可以發現稚魚和成魚。但和石首魚不同的是,鯡科魚類有明顯的區域分布趨勢: 大多分布在靠近海洋的下游河口地區,豐度隨著離海距離增加而降低。然而隨著乾季的尾聲,鹽度往上游推進時也會到河口上游分布。甘比亞倒游鯰(Synodontis gambiensis)是一種淡水魚類,但是喜歡至河口地區生活。其豐度隨著離海距離增加而增加,但是在雨季晚期、水量增加時會往下游地區移動,但在乾季時,分布就主要侷限在上游地區(圖八)。

Simier et al. (2006) 將調查區域之魚類按照先前的方式分為八個生態群,然後利用多變量統計方法中的因素分析、主成分分析以及多表格比較法分析物理環境魚類聚落。甘比亞河下游物理環境可以以東西向的鹽度、溶氧及透明度梯度所解釋(這些變數可以解釋全體變異的77.4%)。而不同的魚類生態群分布在不同的物理梯度的位置,代表這些生態群對於海水或淡水不同的喜好依賴程度(圖九)。然而這樣東西向的梯度同時受到季節的影響,在乾季初期(12月)最為明顯,而在乾季尾期雨季初期(6月)此梯度出現最小的對比。

最後這一魚多吃的調查,竟可在2012又發表了一篇文章(Guillard et al. 2012),比較魚類豐度指標是否會因為不同採樣方式(圍網或聲納)而有所差異 。兩個採樣方式所得之豐度指標,大體呈現出類似的趨勢(圖十) ,同時不同方式所求得之豐度指標有高度相關(圖十一)。雖然作者用詭異的迴歸樹來嘗試將其他干擾因素排除,但我覺得簡單用泛線性模式家族等統計方法,就可以將這些干擾因素排除,相關不是很好看的圖十一應該也可以變得有說服力些。(基本上我覺得這一篇會被接受也很神奇....可見SCI論文不難寫呀....)


表一.利用圍網調查所得之魚種、生活區域、出現次數、數量及生物量。Credit: Albaret et al. 2004.
Table.1. Summary table for the purse-seine survey.
圖七.八種棲地群的種類豐度、個體數量及生物量。Credit: Albaret et al. 2004.
Figure 7. Species richness, numbers and biomass for the fish from the 8 biological categories.

圖八.一些重要魚種之豐度與離海距離之變化。Credit: Albaret et al. 2004.
Figure 8. The spatial trend of the abundance of some essential fish species.



圖九. 圍網及聲納之魚類豐度指標比較圖。Credit: Guillard et al.(2012)
Figure 9. Fish abund




圖十. 圍網及聲納之魚類豐度指標比較圖。Credit: Guillard et al.(2012)
Figure 10. Fish abundance indexes from purse-seine (left panels) and acoustic survey (right panel)
圖十一. 圍網及聲納之魚類豐度指標相關圖。Credit: Guillard et al.(2012)
Figure 11. Correlation between abundance index from purse-seine and acoustic survey




Now lets move to another study in the same region and period, Vidy et al. (2004). Their object is to examine  the juvenile fish assemblage occupying the lateral mangrove channels of the estuary of Gambia River. In May, September and November, 2002, the team collected fish juveniles by small meshed fyke-nets in six stations from the river mouth to the 130 km upstream (Figure 12). The nets were set at night in channels adjacent to the main channel of the estuary. The sampling was conducted to coincide with the new moon phase and an evening flood tide as close as possible, given the assumption that that juvenile fish enter the mangrove area with the tide.

The catch are dominant by small-sized individuals (< 100 mm fork length), as reflected in the small mean size of most species (Table 2). The juvenile fish assemblage of the Gambia estuary was dominated by the estuary-residing species, while the juveniles of fish species with high affinity to seawater are limited in numbers.Variations in juvenile abundance were also linked to recruitment seasons and the period from May to September-November suggests a breeding season similar to that of
the resident estuary species, as indicated by the join of early juveniles in September to November, for example, Pseudotolithus elongatus. Generally for the species spawning at sea, their juvenile abundance decreased with increasing distance from the sea, with an exception of Polydactylus quadrifilis that its juveniles were found in the upper stations with very low salinity.


接下來,是一篇大約在同時期,採樣區域也重疊的達卡法國研究團隊,針對甘比亞河下游所做的研究,結果整合在Vidy et al. (2004)這篇文章。他們於2002年五月、九月還有十一月,在與甘比亞河主流相接的主要水道設小網目的袋張網採樣,從河口到上游130公里處總共設立 六個採樣點(圖十二)。因為她們假設小體型的稚魚會利用潮汐進入甘比亞河口,因此研究者盡可能在新月的大潮採樣。

樣本以小型個體的稚魚為主,同時大多尾叉長小於100 mm(表二)。魚種多為生活在河口的種類,海洋性魚種數量有限。 稚魚數量的變化也反映了入添的季節,由於稚魚在九至十一月的數量達到高峰,因此可以推測這些魚種在五月至九月產卵,而以石首魚( Pseudotolithus elongatus)為代表。在海洋產卵的魚種,一般稚魚數量隨著離海距離增加而減少,但是馬拔魚(Polydactylus quadrifilis) 是一個例外。研究者在最上游、低鹽度的站點,仍然可以採集到馬拔魚的稚魚。
Vidy et al. (2004)

圖十二. Vidy 等人在甘比亞河下游的採樣點。Credit: Vidy et al.(2004)
Figure 12. Sampling stations in Vidy et al. (2004)

表二. 採集到之物種個數及體型。Credit: Vidy et al.(2004)
Table 2. The number and size of the collected fish species
Then Louca et al. (2009) further examined the fish fauna in the floodplains in the lower reach of the Gambia. The floodplain borders the main channel of Gambia River and the last 200 km was fringed by mangrove forest. The sample sites locate in the North Bank Region east of Farafenni town and are approximately 193 and 209 km upstream, close to the saline water limit in the end of the dry season (Figure 13).  Fish were monthly sampled using cast and hand nets along two transects on the floodplain, and with fyke-nets in two creeks from May to November 2005 and 2006.

Totally 32 fish species belonging to 15 families were collected from the floodplain transects in 2005
and 2006 (Table 3). Greater fish species richness was associated with low conductivity, low pH and deep water. The species richness was greater in creeks than that in floodplain habitats, probably because they acted as conduits for fish passing in and out of the floodplain. The also found that floodplains of the lower reach of the Gambia River is an essential fish habitat as both a habitat for small-sized fish to complete their life history, as well as a nursery habitat for some fish species mainly encountered in the main channel, as indicated by high percentage of immature juveniles.

Louca et al. (2009)則研究甘比亞河下游泛洪區的魚類相。甘比亞河泛洪區將主流給南北包圍,而泛洪區最後200公里則由紅樹林所圍繞。兩個採樣地點分別在北岸省首會Farafenni東方約193及209公里以東,也位於甘比亞河乾季海水入侵的最上游界限(圖十三)。採樣時間在2005至2006年的五月到十一月。在泛洪區,研究者在兩個穿越線上利用手拋網採樣,而在支流則設立袋張網採樣。

總共採集到32種15科的魚類(表三)。低電導度、低PH值以及深水區和高魚類種類數有關,同時在支流有比較多的魚種類數,這可能是因為支流是魚類進入及離開泛洪區的中間通道之緣故。同時他們也發現研究的甘比亞河泛洪區是重要的魚類棲地,讓小型魚類會可以在泛洪區完成完整的生命週期。並且由於在泛洪區發現常在主流發現魚種的稚魚,代表泛洪區同時也會這些魚種作孵育場之用。

Louca et al. (2009).
圖十三. Louca 等人採樣點地圖。河旁的灰色區域為泛洪區域。Credit: Louca et al.(2009)
Figure 13. Sampling sites (BKD and P) in Louca et al. (2009). The grey area indicates the floodplain

表三. 魚種之相對頻度。Credit: Louca et al.(2009)
Table 3. Relative abundance of fish species in Louca et al. (2009).


As far as I know, few studies have examined the fish fauna in the freshwater habitats (salinity zero) of the Gambia River that the Czech team, who has done a couple of surveys in and near the Niokolo Koba National Park in Senegal, provide the best insights of the fish fauna in the freshwater region of Gambia River.

The first comes Reichard (2008) that conducted a visual census, which is also as far the only observation of fish in situ. The survey was done a deep freshwater pool at Badoye in the middle reaches of the River Gambia, where the river flows through Niokolo Koba National Park during daytime in mid March, 2007. A snorkeller viewed each point for the presence of fishes, recorded the species, identified the size (standard length), maturation classes (juvenile, sub-adult and adult), number of individuals and their position in the water column. The snorkeller record their species, size and maturation class (juvenile, sub-dult and adult), number of individuals and their position in the water column. Also the environmental data were recorded.

Totally 429 individual fishes belonging to 14 species and six families were recorded (Table 4). The most abundant species was Rhabdalestes septentrionalis and R. senegalensis and Hemichromis bimaculatus are the species with the highest appearance (> 30 %). By direct observation, they were able to reveal the species-specific fish-habitat association. For example, for two species with similar size ( ~ 30 mm standard length), Aplocheilichthys normani inhabited shallow marginal areas with no flow and it occurred near the water surface, while Nannocharax ansorgii, preferred deeper region farther from the shore.

就我所知,對於甘比亞河中上游淡水區域魚類種類的文獻不多。而捷克團隊在甘比亞河上游,塞內加爾境內的Niokolo Koba國家公園所作的研究,提供了甘比亞河淡水區域魚類相重要的資訊

首先是他們的一次潛水調查,也是目前針對甘比亞河魚類相唯一的直接在環境觀察的研究。他們在2007年三月中旬,在甘比亞河中游,Niokolo Koba國家公園中Badoye 地區的一個深水淡水池進行研究。研究者潛水觀察魚類存在與否,如果看到魚類,進可能記錄相關生物資訊,例如數量、魚類體型(標準體長),發育階段(稚魚、 亞成魚或成魚)以及在水中之深度位置。同時也記錄相關的環境水文參數。

他們總共觀察到429隻魚類個體,屬於14種六科(表四)。數量上來說,成群出現的燈魚類Rhabdalestes septentrionalis 數量最多。然而已出現頻度來說,則以塞內加爾燈魚 R. senegalensis 及寶石慈鯛最為常見,出現機率超過30%。因為是潛水員直接在水下觀測,因此他們的研究可以直接反映不同魚種對於環境的不同喜好。例如兩種同樣是約30mm的小型魚,Aplocheilichthys normani 喜歡在離岸無水流的表層棲息,而這種Nannocharax ansorgii鯉科魚澤喜好棲息在離岸較遠的水深處。

Reichard (2008)

表四. 在Niokolo Koba 國家公園紀錄之魚種體型及數量。Credit: Reichard (2008)
Table 4. Size and numbers of fish species found in Reichard (2008).

Then it comes their second study, White et al. (2012), which was undertaken also in Niokolo Koba National Park in Senegal. In this 4-year survey (2003-2007, likely) they collected the fish using the seine net and at each site, a single sample consisted of usually three seine hauls (possibly from non-overlapping area swept). Sampling sites were classified into five categories, according to decreasing connectivity to the main channel: (1) main river channels, (2) tributaries, (3) oxbow lakes, (4) temporary water bodies, and (5) spring area (only during dry season). 

They collected totally 49  fish species (Table 5). The habitat use of the fish varied widely among species and seasons. For example, some fish such as Barbus macrops, Barbus pobeguini, and Rhabdalestes septentrionalis occurred generally among all habitats and seasons, whereas other species were observed in certain habitats and/or seasons: Brienomyrus brachyistius occurred only in spring pools, and Ctenopoma petherici was found only in temporary floodplain pools during the wet season (rain season) and in the tributaries and oxbow lakes during the dry season.
 
According to non-metric multidimensional scaling (Figure 15), the fish assemblage depended on both habitats and seasons. During the rain season, the fish assemblage in the main river channel was similar to that in  the tributaries, while the oxbow lakes and temporary water bodies had distinct assemblages (Figure 15). In the dry season, however,  the fish species composition in the tributaries and oxbow lakes altered greatly with high variation along y-axis and x-axis in Figure 15, respectively, which implied joining of different fish species. Also in the dry season, the fish assemblage in the spring pools was distinctly different to main river channel and connecting tributaries.

捷克團隊接下來繼續在Niokolo Koba國家公園進行研究,他們更利用並發表White et al. (2012)這篇文章。在這為期四年的研究中,研究者利用圍網採集魚類,並且在每一個宰樣點,一個樣本通常下網三次(三次捕撈之涵蓋範圍應該不同)。而研 究者根據和主河道的連接程度,將採樣點分成五類: (1)主河道、(2)支流域、(3)牛軛湖、(4)暫時性水體及(5)只有在乾季出現的湧泉區。

他們在這四年研究中採集到49種魚種(表五),而且也發現魚類棲地的利用,有很大的種間及季節的變異。例如Barbus macrops, Barbus pobeguini,Rhabdalestes septentrionalis 這三種類對棲地選擇性不高,廣泛在每個季節的所有棲地出現。然而有些魚種只會在某些棲地或季節出現,如Brienomyrus brachyistius 只有出現在湧泉區,而 Ctenopoma petherici在雨季出現在支流,而在乾季則分布在牛軛湖。

研究者利用非計量多向度法,分析不同樣本魚類種類組成的差異(圖十五),結果發現魚類種類組成也受到季節和棲地的影響。在雨季時,甘比亞河河川主流和支流魚類相很接近,然而和牛軛湖及暫時性水體魚類種類組成就差異很大。然而在乾季時,支流和牛軛湖的魚種種類分別在Y軸及X軸出現劇烈的震盪,暗示有不同的魚類種類加入群體。在乾季的湧泉區,也和主流及相連接的支流,有著明顯不同的魚類種類組成。


White et al. (2012)


圖十四. Niokolo Koba 國家公園內之採樣點分布地圖。Credit: White et al. (2012)
Figure 14.Sampling sites in Niokolo Koba National Park


表五. 在Niokolo Koba 國家公園紀錄之魚種豐度。Credit: White et al (2012)
Table 5. Fish abundance index (CPUE) in White et al. (2012)

圖十五. 各樣本魚類種類相成之非計量多向度圖。當樣本點越靠近,表示其魚種類組成越相近。Credit: White et al (2012)
Figure 15. Non-metric multidimensional scaling plot for the samples. Axes are composed of fish species loadings. Close points suggested similar fish species composition.

In conclusion, although locating in the tropics, and generally being considered as homogenous habitats, the Gambia River is in fact heterogeneous in terms of essential physical parameters, for example, salinity and water flow with strong among habitats and between dry-rain seasonal contrasts. Therefore, the fishes in the Gambia River showed large spatial and temporal variation in the species composition, occurrences, abundances, and life-history stages. The Gambia River is by far (2015, end of August) not interrupted by any artificial dam, and therefore it provides an ideal place to study the relationship between fish, marine and freshwater environment in a nearly pristine (or relatively less development pressure) state in terms of connectivity from the river mouth to the upper reaches. However, in most of the studies the research efforts were deposited in the saline part of the lower reach region (corresponding to the West Region and Lower River Region in the Gambia), possibly because of (1) highly productive environment, (2) importance in fisheries as fishing or nursery grounds, and (3) fewer logistic issues. One of the few studies on the freshwater part of the Gambia river located in the Niokolo Koba National Part in Senegal, leaving a vacuum about the fishes in the region starting from the Central River Region and Upper River Region of the Gambia. Studies on these section will have good contribution on the general understanding of the fish in this last few un-distributed large river in the world.

最後總結這篇長文:
雖然熱帶地區過去往往被認為是穩定、缺乏環境條件變異的地區,但是熱帶地區的甘比亞河絕對不符合這陳舊的假設,是個環境因子有著劇烈變化,帶有鮮明棲地間及乾濕季對比的區域。在此環境生活的魚類,其種類組成、出現頻率、族群大小及生活史階段在時空上有相對應的變異。甘比亞河現今(2015年八月底)仍然沒有人為的物體(如水壩)攔阻,因此甘比亞河是一個研究魚類如何在"自然"、"無干擾"、"無障礙"的環境下,與海水及淡水環境互動之理想區域。然而甘比亞河中下游有鹽度之區域可能因為(1)高生產力、(2)作為漁場或孵育場,對於甘比亞漁業有高重要性,及(3)較容易抵達採樣等原因,目前大多數的魚類研究都集中在下游區段。對於甘比亞河淡水區段的研究,所知也僅有捷克團隊在塞內加爾境內的Niokolo Koba國家公園的系列研究,而針對甘比亞河在甘比亞中游省至上游省的區段的研究目前人付之闕如。因此對於分布在這區段的魚類研究,將可在這條少數未被人類阻斷的大河,其魚類分布模式提供更完善的資訊。